Having it in a virtual box means that you don't have to partition your drive, it can usually be moved easily between Macs, and it doesn't require you to reboot your machine, you can even delete it if you hate it and no repartitioning to get your space back. Running it in a virtual box can be great though because it is the easiest and most hassle free way to get ubuntu on you mac. This can be a little tricky depending on which mac you have, but if you follow the guides out there carefully, everything should go fine. There are many guides to installing Ubuntu on your mac all over the web, usually involving rEFIt. If you have extra HD space that you don't mind partitioning to use for the install, its great, just be sure to give yourself enough space in the beginning because expanding partitions can be a pain. You're native install will have all the RAM and CPU cycles to itself. Running it natively will give you better performance because you aren't running two OS's at the same time. Running an OS natively vs running it through a VM both have their strong and weak points.
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